TBR

TBR:

Bio + usability

• Usability of Navigation Tools for Browsing Genetic Sequences
• Heuristic evaluations of bioinformatics tools: a development case
• Simulation tools for biochemical networks: evaluation of performance and usability
• Monitoring the evolutionary aspect of the Gene Ontology to enhance predictability and usability
• [Chilana PK, Wobbrock JO, Ko JA (2010) Understanding usability practices in complex domains. Proceedings of the 28th International Conference on Human Factors in Computing Systems (CHI ‘10). pp. 2337–2346. 10–15 April 2010; Atlanta, Georgia, United States.
• Socio-Cultural characteristics of usability of bioinformatics databases and tools
• Supporting cognition in systems biology analysis: findings on users’ processes and design implications
• A pilot study into the usability of a scientific workflow construction tool
• Supporting cognition in systems biology analysis: findings on users’ processes and design implications

Bio + open source

• Challenges in funding and developing genomic software: roots and remedies

OPEN SOURCE:

• https://www.slideshare.net/krap/open-source-software-resilience-framework
• COOPERATIVE SIGNALING BEHAVIOR: SIGNALS FOR OPEN SOURCE PROJECT HEALTH Georg John Peter Link, University of Nebraska at Omaha

Sustainability in Open Source

• Measuring sustainability of seed-funded earth science informatics projects

General usability

• Marchionini G. Toward human-computer information retrieval. Bul Am Soc Info Sci Tech 2007 Sep 20;32(5):20-22. doi: 10.1002/bult.2006.1720320508

Bio - general

• Domain knowledge and data quality perceptions in genome curation work
• Cognitive Task Analysis of Data Mining Processes in Bioinformatics Research
• PathSim visualizer: an Information-Rich Virtual Environment framework for systems biology
• Using multiple cognitive task analysis methods for supervisory control interface design in high-throughput biological screening processes
• Challenges in bioinformatics: infrastructure, models and analytics

Mental modelling

• The cognitive basis of model-based reasoning in science
• Drawing-to-Learn: A Framework for Using Drawings to Promote Model-Based Reasoning in Biology
• Externalising students’ mental models through concept maps
• Understanding and characterizing insights: how do people gain insights using information visualization?
• Insight into mental models of novice Internet searchers
• The effects of conceptual description and search practice on users’ mental models and information seeking in a case-based reasoning retrieval system
• Identifying the Impact of Domain Knowledge and Cognitive Style on Web-Based Information Search Behavior